Publications
Mechanisms for Hiding Sensitive Genotypes with Information-Theoretic Privacy
Fangwei Ye, Hyunghoon Cho, Salim El Rouayheb
IEEE International Symposium on Information Theory (ISIT), 2020
arXiv, 2020 [ Link ]Density-Preserving Data Visualization Unveils Dynamic Patterns of Single-Cell Transcriptomic Variability
Ashwin Narayan, Bonnie Berger*, Hyunghoon Cho*
bioRxiv, 2020 [ Link ]Contact Tracing Mobile Apps for COVID-19: Privacy Considerations and Related Trade-offs
{Hyunghoon Cho, Daphne Ippolito, Yun William Yu}
arXiv, 2020 [ Link ]Privacy-Preserving Biomedical Database Queries with Optimal Privacy-Utility Trade-offs
Hyunghoon Cho*, Sean Simmons*, Ryan Kim, Bonnie Berger
Cell Systems, 2020 [ Link ]
Also to appear in RECOMB, 2020Coexpression Uncovers a Unified Single-Cell Transcriptomic Landscape
Brian Hie, Hyunghoon Cho, Bryan Bryson, Bonnie Berger
bioRxiv, 2019 [ Link ]Emerging Technologies Towards Enhancing Privacy in Genomic Data Sharing
Bonnie Berger*, Hyunghoon Cho*
Genome Biology, Editorial, 2019 [ Link ]Geometric Sketching Compactly Summarizes the Single-Cell Transcriptomic Landscape
Brian Hie*, Hyunghoon Cho*, Benjamin DeMeo, Bryan Bryson, Bonnie Berger
Cell Systems, 2019 [ Link ]
Also appeared in RECOMB, 2019
*equal-contributionLarge-Margin Classification in Hyperbolic Space
Hyunghoon Cho, Benjamin DeMeo, Jian Peng, Bonnie Berger
AISTATS, 2019 [ Link ]Realizing Private and Practical Pharmacological Collaboration
Brian Hie*, Hyunghoon Cho*, Bonnie Berger
Science 362(6412), 2018 [ Link ]
Featured in MIT News [ Link ]
*equal-contributionGeneralizable and Scalable Visualization of Single Cell Data Using Neural Networks
Hyunghoon Cho, Bonnie Berger, Jian Peng
Cell Systems 7(2), 2018 [ Link ]
Also appeared in RECOMB, 2018Secure Genome-wide Association Analysis Using Multiparty Computation
Hyunghoon Cho, David J. Wu, Bonnie Berger
Nature Biotechnology 36(6), 2018 [ Link ]
Featured in Editors’ Choice, Science 360(6393) [ Link ] and MIT News [ Link ]Compact Integration of Multi-Network Topology for Functional Analysis of Genes
Hyunghoon Cho, Bonnie Berger, Jian Peng
Cell Systems 3(6), 2016 [ Link ]
Reconstructing Causal Biological Networks through Active Learning
Hyunghoon Cho, Bonnie Berger, Jian Peng
PLOS One 11(3), 2016 [ Link ]Exploiting Ontology Graph for Predicting Sparsely Annotated Gene Function
Sheng Wang*, Hyunghoon Cho*, ChengXiang Zhai, Bonnie Berger, Jian Peng
Bioinformatics 31(12), 2015 [ Link ]
Also appeared in ISMB/ECCB, 2015
*equal-contributionDiffusion Component Analysis: Unraveling Functional Topology in Biological Networks
Hyunghoon Cho, Bonnie Berger, and Jian Peng
RECOMB, 2015 [ Link ]High-Resolution Transcriptome Analysis with Long-Read RNA Sequencing
Hyunghoon Cho, Joe Davis, Kevin S. Smith, Alexis Battle, and Stephen B. Montgomery
PLOS One 9(9), 2014 [ Link ]Unraveling the Genetics of Human Diseases by Integrating Patterns for Epistasis Detection
Hyunghoon Cho
Undergraduate Honors Thesis, Stanford University, 2013 [ Link ]